[SCIFIO] Scrambled tiles in czi files with Scifio-Itk bridge

[Mark Hiner]

Hi Kedar,

 Just wanted to let you know that I'll be out of the country for two weeks
starting tomorrow, and all of my time right now is being spent on the ImageJ2
release
<http://developer.imagej.net/2014/06/04/imagej-200-release-candidate>.

 Would you mind filing this as an issue on the scifio-itk-bridge github
site: https://github.com/scifio/scifio-itk-bridge ? That way it won't get
lost in my e-mail and I can investigate when I get back.

Thanks!
- Mark


On Wed, Jun 18, 2014 at 2:39 PM, Kedar Grama <gbkedar at gmail.com> wrote:

> Hi Mark,
>
> I used SCIFIO to write czi as a 3d stack of either nrrd or tiffs. I get
> tiles that are scrambled and this happens at random. My code to convert the
> files is here:
>
> https://github.com/gbkedar/farsight/blob/IlluminationGraphCuts/IlluminationCorrection/readCziWriteCorrectedTiles.cpp
>
> I have made montages of the same image in three instances where tiles were
> scrambled and once when it worked. The czi file is similar to the one I
> sent you in June or July last year. Please let me know if you need the file
> that I'm using right now and I'll upload it.
>
> Thanks,
>
> -Kedar
>
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