[SCIFIO] Scrambled tiles in czi files with Scifio-Itk bridge

[Kedar Grama]

Hi Mark,

I have filed an issue on the github site scifio-itk-bridge. We will work
around the issue for now.

Thanks,

-Kedar


On Thu, Jun 19, 2014 at 8:34 AM, Mark Hiner <hinerm at gmail.com> wrote:

> Hi Kedar,
>
>  Just wanted to let you know that I'll be out of the country for two weeks
> starting tomorrow, and all of my time right now is being spent on the ImageJ2
> release
> <http://developer.imagej.net/2014/06/04/imagej-200-release-candidate>.
>
>  Would you mind filing this as an issue on the scifio-itk-bridge github
> site: https://github.com/scifio/scifio-itk-bridge ? That way it won't get
> lost in my e-mail and I can investigate when I get back.
>
> Thanks!
> - Mark
>
>
> On Wed, Jun 18, 2014 at 2:39 PM, Kedar Grama <gbkedar at gmail.com> wrote:
>
>> Hi Mark,
>>
>> I used SCIFIO to write czi as a 3d stack of either nrrd or tiffs. I get
>> tiles that are scrambled and this happens at random. My code to convert the
>> files is here:
>>
>> https://github.com/gbkedar/farsight/blob/IlluminationGraphCuts/IlluminationCorrection/readCziWriteCorrectedTiles.cpp
>>
>> I have made montages of the same image in three instances where tiles
>> were scrambled and once when it worked. The czi file is similar to the one
>> I sent you in June or July last year. Please let me know if you need the
>> file that I'm using right now and I'll upload it.
>>
>> Thanks,
>>
>> -Kedar
>>
>
>
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